Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs12147310 chr14:105555223 C/T 7.98E-7 115 41.22 46.27 9.1 KM Plot
THYM rs12151001 chr19:29283386 C/G 5.12E-5 114 50.1 38.13 18.07 KM Plot
THYM rs12184584 chr13:26627990 A/G 2.23E-6 119 40.3 50.47 13.75 KM Plot
THYM rs12186257 chr4:187183498 G/C 1.89E-8 115 12.63 41.77 42.73 KM Plot
THYM rs12225091 chr11:125570535 A/G 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs12284618 chr11:45758186 G/C 8.07E-7 119 49.6 23.7 28.43 KM Plot
THYM rs1231282 chr19:49239616 T/C 2.36E-6 114 11.58 53.27 38.13 KM Plot
THYM rs12338230 chr9:97226466 C/G 8.87E-5 118 40.67 45.87 17.03 KM Plot
THYM rs12338572 chr9:97177641 A/G 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs12341403 chr9:97159686 T/C 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs12343123 chr9:97205546 C/T 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs12343977 chr9:97258906 G/C 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs12349329 chr9:86708868 C/T 9.0E-5 119 38.83 49.4 10.83 KM Plot
THYM rs12368326 chr12:763370 A/T 7.09E-5 119 42.33 40.78 25.83 KM Plot
THYM rs12369179 chr12:122963550 C/T 6.08E-13 119 41.22 42.55 6 KM Plot